Annotations such as named entities, division by sentence, etc from the pipeline are viewable. You'll get a list of all the annotations for this clinical document in the Analysis Results frame. desc/ctakes-core/desc/analysis_egine/SentencesAndTokensAggregate.xmlĥ. Note: If you would like to TEST some simple annotators to ensure it's working without UMLS, you can just load: From the menu bar, click Run -> Run AggregatePlaintextFastUMLSProcessor. She takes an aspirin a day for knee pain.Ĥ. May want a Resting Metabolic Rate as well. She agrees with the plan and has my number for further assessment. She was instructed to drink 2-3 cans of liquid supplement to help promote weight gain. Pt has been on a 3-day calorie count and has had an average intake of 1100 calories. Daily Protein needs: 40 grams, assessed as 1.0 g/kg. Nutritious Medical Nutrition Therapy for Hyperlipidemia Referral from: Julie Tester, RD, LD, CNSD Phone contact: (555) 555-1212 Height: 144 cm Current Weight: 45 kg Date of current weight: 02-29-2001 Admit Weight: 53 kg BMI: 18 kg/m2 Diet: General Daily Calorie needs (kcals): 1500 calories, assessed as HB + 20% for activity. Jdbc:hsqldb:\cTAKES_3\resources\org\apache\ctakes\dictionary\lookup\fast\customdict\ customĭr. ![]() You could enter the following for the URL properties file isĬ:\cTAKES_3\resources\org\apache\ctakes\dictionary\lookup\fast\customdict\ custom.properties Java -cp C:\Apps\hsqldb\hsqldb- 1.8.0.10.jar Ĭonnect to your database, by entering the appropriate URL and pressing the Ok button.įor example, if you are on Windows and your dictionary's. For example, if your 1.8 jar is in C:\Apps\hsqldb\, you would enter this command: Open the HSQLDB manager GUI for version 1.8. If you need to, you can download it from Maven Central at: For example, if you used the cTAKES 3.2.2 convenience binary, /lib/hsqldb-1.8.0.10.jar ) ![]() Locate the 1.8 hsqldb jar that you used when you created the database. Open the database with the 1.8 hsqldb jar: Locate the filename.properties file for your databaseģ.Suggested: make a copy of your database directory for use with 4.0, so that the filename.properties and filename.script and any other files in that directory are duplicated, where filename is dependent on what you named your database.properties file sets your dictionary's database to be read-only, you need to change it before you can convert it. The dictionaries installed in the preceding section do not need to be converted.Ģ. If you created your own HSQLDB dictionaries for use with a previous release of cTAKES and you plan to use those dictionaries with cTAKES 4.0, you must convert your dictionaries to be compatible with cTAKES 4.0.
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